Warping two-dimensional electrophoresis gel images to correct for geometric distortions of the spot pattern

Warping two-dimensional electrophoresis gel images to correct for geometric distortions of the spot pattern.

A crucial step in two-dimensional gel based protein expression analysis is to match spots in different gel images that correspond to the same protein. It still requires extensive and time-consuming manual interference, although several semiautomatic techniques exist. Geometric distortion of the protein patterns inherent to the electrophoresis procedure is one of the main causes of these difficu...

A Novel Spot-Enhancement Anisotropic Diffusion Method for the Improvement of Segmentation in Two-dimensional Gel Electrophoresis Images, Based on the Watershed Transform Algorithm

Introduction Two-dimensional gel electrophoresis (2DGE) is a powerful technique in proteomics for protein separation. In this technique, spot segmentation is an essential stage, which can be challenging due to problems such as overlapping spots, streaks, artifacts and noise. Watershed transform is one of the common methods for image segmentation. Nevertheless, in 2DGE image segmentation, the no...

A Laplacian of Gaussian-Based Approach for Spot Detection in Two-Dimensional Gel Electrophoresis Images

Two-dimension gel electrophoresis (2-DE) is a proteomic technique that allows the analysis of protein profiles expressed in a given cell, tissue or biological system at a given time. The 2-DE images depict protein as spots of various intensities and sizes. Due to the presence of noise, the inhomogeneous background, and the overlap between the spots in 2-DE image, the protein spot detection is n...

Geometric Alignment of 2D Gel Electrophoresis Images

OBJECTIVES 2D gel electrophoresis (2-DE) is the method of choice for analyzing protein expression in the field of proteomics, for example, comparing a reference with a test population. However, due to complex physical and chemical processes the locations of proteins generally vary in different 2-DE images. To cope with these variations, accurate geometric alignment of 2-DE images is important. ...

Two-dimensional Gel Electrophoresis